Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC3469Sugar ABC transporter permease. (277 aa)    
Predicted Functional Partners:
ABC3471
Sugar ABC transporter substrate-binding protein.
 
   0.943
ABC3470
Sugar ABC transporter permease.
 
  
0.893
ABC3122
Sugar ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.855
ABC0399
Sugar ABC transporter permease.
 
   0.847
ABC0435
Sugar ABC transporter permease.
 
   0.847
ABC3273
Sugar ABC transporter permease.
 
   0.847
ABC0686
Sugar ABC transporter permease.
 
   0.846
araP
Sugar ABC transporter permease.
 
   0.846
ABC3584
Sugar ABC transporter permease.
 
   0.845
msmX
Sugar ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.844
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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