STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC3472Oxidoreductase. (326 aa)    
Predicted Functional Partners:
ABC3468
Sugar phosphate isomerases/epimerase.
 
    0.786
ABC1574
NADH-dependent dehydrogenase.
  
     0.769
ABC3286
NADH-dependent dyhydrogenase.
  
     0.767
ABC3276
Dehydrogenase.
  
     0.760
iolG
Myo-inositol 2-dehydrogenase; Involved in the oxidation of myo-inositol (MI) and D-chiro- inositol (DCI) to 2-keto-myo-inositol (2KMI or 2-inosose) and 1-keto-D- chiro-inositol (1KDCI), respectively.
  
     0.688
ABC3471
Sugar ABC transporter substrate-binding protein.
       0.672
ABC0829
Oxidoreductase.
  
     0.662
ABC2010
Oxidoreductase.
  
     0.607
ABC3469
Sugar ABC transporter permease.
       0.607
ABC3470
Sugar ABC transporter permease.
       0.607
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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