ABC3483 protein (Bacillus clausii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABC3483

N-carbamoyl-L-amino acid hydrolase. (432 aa)

Predicted Functional Partners:

pucH

0.958

pucG

0.941

pucH-2

0.914

ABC3736

0.856

pucM

0.537

ABC3482

0.530

ABC3782

0.415

ABC3783

0.405

ABC3735

0.401

Your Current Organism:

Bacillus clausii

NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABC3482	ABC3483	ABC3482	ABC3483	Conserved hypothetical protein.	N-carbamoyl-L-amino acid hydrolase.	0.530
ABC3483	ABC3482	ABC3483	ABC3482	N-carbamoyl-L-amino acid hydrolase.	Conserved hypothetical protein.	0.530
ABC3483	ABC3735	ABC3483	ABC3735	N-carbamoyl-L-amino acid hydrolase.	Uricase; Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin.	0.401
ABC3483	ABC3736	ABC3483	ABC3736	N-carbamoyl-L-amino acid hydrolase.	Uricase.	0.856
ABC3483	ABC3782	ABC3483	ABC3782	N-carbamoyl-L-amino acid hydrolase.	Dihydropyrimidine dehydrogenase.	0.415
ABC3483	ABC3783	ABC3483	ABC3783	N-carbamoyl-L-amino acid hydrolase.	D-hydantoinase.	0.405
ABC3483	pucG	ABC3483	ABC3739	N-carbamoyl-L-amino acid hydrolase.	Aminotransferase.	0.941
ABC3483	pucH	ABC3483	ABC3732	N-carbamoyl-L-amino acid hydrolase.	Allantoinase; Catalyzes the conversion of allantoin (5-ureidohydantoin) to allantoic acid by hydrolytic cleavage of the five-member hydantoin ring; Belongs to the metallo-dependent hydrolases superfamily. Allantoinase family.	0.958
ABC3483	pucH-2	ABC3483	ABC3738	N-carbamoyl-L-amino acid hydrolase.	Allantoate amidohydrolase.	0.914
ABC3483	pucM	ABC3483	ABC3734	N-carbamoyl-L-amino acid hydrolase.	Transthyretin-like protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.	0.537
ABC3735	ABC3483	ABC3735	ABC3483	Uricase; Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin.	N-carbamoyl-L-amino acid hydrolase.	0.401
ABC3735	ABC3736	ABC3735	ABC3736	Uricase; Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin.	Uricase.	0.975
ABC3735	ABC3783	ABC3735	ABC3783	Uricase; Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin.	D-hydantoinase.	0.523
ABC3735	pucG	ABC3735	ABC3739	Uricase; Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin.	Aminotransferase.	0.780
ABC3735	pucH	ABC3735	ABC3732	Uricase; Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin.	Allantoinase; Catalyzes the conversion of allantoin (5-ureidohydantoin) to allantoic acid by hydrolytic cleavage of the five-member hydantoin ring; Belongs to the metallo-dependent hydrolases superfamily. Allantoinase family.	0.964
ABC3735	pucH-2	ABC3735	ABC3738	Uricase; Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin.	Allantoate amidohydrolase.	0.642
ABC3735	pucM	ABC3735	ABC3734	Uricase; Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin.	Transthyretin-like protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.	0.997
ABC3736	ABC3483	ABC3736	ABC3483	Uricase.	N-carbamoyl-L-amino acid hydrolase.	0.856
ABC3736	ABC3735	ABC3736	ABC3735	Uricase.	Uricase; Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin.	0.975
ABC3736	ABC3783	ABC3736	ABC3783	Uricase.	D-hydantoinase.	0.510