Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC3492Spore germination protein KB. (362 aa)    
Predicted Functional Partners:
ABC3493
Spore germination protein KC.
 
  
 0.966
ABC3491
Spore germination protein KA.
 
  
 0.935
gerAC
Spore germination protein.
 
  
 0.789
gerBC
Spore germination protein.
 
  
 0.776
ABC2022
Spore germination protein.
  
     0.771
ABC2021
Spore germination protein.
 
  
 0.750
ABC2005
Spore germination protein.
 
  
 0.741
ABC3703
Spore germination protein.
 
  
 0.739
ABC3835
Spore germination protein.
 
  
 0.737
gerKC
Spore germination protein KC.
 
  
 0.727
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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