Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC3493Spore germination protein KC. (373 aa)    
Predicted Functional Partners:
ABC3492
Spore germination protein KB.
 
  
 0.966
ABC3491
Spore germination protein KA.
 
  
 0.930
gerAB
Spore germination protein.
 
  
 0.744
ABC2022
Spore germination protein.
 
  
 0.737
gerAC
Spore germination protein.
  
   
 0.731
ABC3836
Spore germination protein.
 
  
 0.724
ABC2004
Spore germination protein.
 
  
 0.669
ABC2021
Spore germination protein.
 
  
 0.661
ABC3703
Spore germination protein.
 
  
 0.658
ABC2003
Sopre germination protein.
 
  
 0.615
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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