STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC3494Antimicrobial peptide ABC transporter permease. (639 aa)    
Predicted Functional Partners:
ABC3495
Antimicrobial peptide ABC transporter ATP-binding protein.
 
 0.998
ABC3228
Two-component sensor histidine kinase.
 
 
 
 0.963
ABC3229
Antimicrobial peptide ABC transporter ATP-binding protein.
 
 
 0.945
ABC0252
Antimicrobial peptide ABC transporter ATP-binding protein.
 
 
 0.929
ABC0255
Two-component sensor histidine kinase.
 
 
 
 0.912
ABC3227
Two-component response regulator.
   
 0.732
ABC3380
Conserved hypothetical protein.
  
     0.603
ABC3993
Antimicrobial peptide ABC transporter ATP-binding protein.
  
 
 0.515
ABC0259
Antimicrobial peptide ABC transporter ATP-binding protein.
  
 
 0.505
ABC0943
Antimicrobial peptide ABC transporter ATP-binding protein.
  
 
 0.505
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
Server load: low (20%) [HD]