STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
msmESugar ABC transporter substrate-binding protein. (453 aa)    
Predicted Functional Partners:
ABC3498
Sugar ABC transporter permease.
 
 0.985
ABC3497
Sugar ABC transporter permease.
 
 0.982
ABC0436
Sugar ABC transporter substrate-binding protein.
  
  
 
0.914
msmX
Sugar ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 0.898
ABC3122
Sugar ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 0.898
ABC0434
Sugar ABC transporter permease.
  
 0.888
ABC0435
Sugar ABC transporter permease.
  
 0.871
ABC3118
Sugar ABC transporter permease.
 
 
 0.558
ABC0662
Sugar ABC transporter permease.
 
 
 0.547
ABC0362
Polysaccharide ABC transporter permease.
 
 
 0.539
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.