Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC3498Sugar ABC transporter permease. (273 aa)    
Predicted Functional Partners:
ABC3497
Sugar ABC transporter permease.
 
0.998
msmE
Sugar ABC transporter substrate-binding protein.
 
 0.989
ABC0435
Sugar ABC transporter permease.
 
  0.961
msmX
Sugar ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.937
ABC3122
Sugar ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.933
ABC0434
Sugar ABC transporter permease.
  
  
 
0.918
ABC0436
Sugar ABC transporter substrate-binding protein.
 
 0.906
ABC3214
Sugar ABC transporter permease.
 
   0.833
araP
Sugar ABC transporter permease.
 
   0.817
ABC0686
Sugar ABC transporter permease.
 
   0.810
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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