gsiB protein (Bacillus clausii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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experimentally determined

co-expression

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gene neighborhood

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[Homology]

Score

gsiB

General stress protein B. (133 aa)

Predicted Functional Partners:

ABC3956

0.810

ohrB

0.800

ctc

0.729

katX

0.698

ABC3728

0.678

bmrU

0.573

ABC2118

0.558

ABC3309

0.551

gtaB

0.545

opuD

0.541

Your Current Organism:

Bacillus clausii

NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABC2118	ABC3956	ABC2118	ABC3956	Conserved hypothetical protein.	General stress protein 17M.	0.411
ABC2118	gsiB	ABC2118	ABC3507	Conserved hypothetical protein.	General stress protein B.	0.558
ABC3309	ABC3956	ABC3309	ABC3956	Conserved hypothetical protein.	General stress protein 17M.	0.429
ABC3309	gsiB	ABC3309	ABC3507	Conserved hypothetical protein.	General stress protein B.	0.551
ABC3728	ABC3956	ABC3728	ABC3956	Conserved hypothetical protein.	General stress protein 17M.	0.604
ABC3728	gsiB	ABC3728	ABC3507	Conserved hypothetical protein.	General stress protein B.	0.678
ABC3956	ABC2118	ABC3956	ABC2118	General stress protein 17M.	Conserved hypothetical protein.	0.411
ABC3956	ABC3309	ABC3956	ABC3309	General stress protein 17M.	Conserved hypothetical protein.	0.429
ABC3956	ABC3728	ABC3956	ABC3728	General stress protein 17M.	Conserved hypothetical protein.	0.604
ABC3956	gsiB	ABC3956	ABC3507	General stress protein 17M.	General stress protein B.	0.810
ABC3956	ohrB	ABC3956	ABC1785	General stress protein 17M.	Organic hydroperoxide resistance protein.	0.871
bmrU	ctc	ABC3974	ABC0080	Multidrug resistance protein.	Ribosomal protein L25 family general stress protein; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.	0.661
bmrU	gsiB	ABC3974	ABC3507	Multidrug resistance protein.	General stress protein B.	0.573
bmrU	gtaB	ABC3974	ABC3698	Multidrug resistance protein.	UTP-glucose-1-phosphate uridylyltransferase.	0.557
bmrU	katX	ABC3974	ABC3969	Multidrug resistance protein.	Catalase; Belongs to the catalase family.	0.682
bmrU	ohrB	ABC3974	ABC1785	Multidrug resistance protein.	Organic hydroperoxide resistance protein.	0.660
bmrU	opuD	ABC3974	ABC1626	Multidrug resistance protein.	Glycine betaine transporter; Belongs to the BCCT transporter (TC 2.A.15) family.	0.553
ctc	bmrU	ABC0080	ABC3974	Ribosomal protein L25 family general stress protein; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.	Multidrug resistance protein.	0.661
ctc	gsiB	ABC0080	ABC3507	Ribosomal protein L25 family general stress protein; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.	General stress protein B.	0.729
ctc	gtaB	ABC0080	ABC3698	Ribosomal protein L25 family general stress protein; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.	UTP-glucose-1-phosphate uridylyltransferase.	0.657