STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC3517Arabinogalactan endo-1,4-beta-galactosidase. (400 aa)    
Predicted Functional Partners:
lacA
Beta-galactosidase.
 
  
 0.892
ABC3519
Sugar ABC transporter permease.
 
  
 0.800
ABC3518
Sugar ABC transporter permease.
  
  
 0.786
cycB
Sugar ABC transporter substrate-binding protein.
 
  
 0.766
ABC1148
Xylosidase/arabinosidase; alpha-L-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.736
ABC1132
Alpha-glucosidase; Belongs to the glycosyl hydrolase 31 family.
  
  
 0.694
ABC0320
Mannan endo-1,4-beta-mannosidase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
  
 0.689
pelB
Pectate lyase.
  
  
 0.668
ABC1405
Beta-galactosidase.
 
  
 0.633
ABC0555
Alpha-glucuronidase; Belongs to the glycosyl hydrolase 67 family.
  
   
 0.607
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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