STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC3540MerR family transcriptional activator. (123 aa)    
Predicted Functional Partners:
ABC3541
Conserved hypothetical protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.622
ABC3768
MarR family transcriptional regulator.
  
   
 0.598
mta
Transcriptional activator.
  
     0.568
ABC4084
Hypothetical protein.
  
     0.567
ABC2008
Gamma-carboxymuconolactone decarboxylase.
 
     0.566
nanE
N-acetylmannosamine-6-phosphate 2-epimerase; Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N- acetylglucosamine-6-phosphate (GlcNAc-6-P).
  
    0.565
ABC3975
MerR family transcriptional activator.
  
     0.533
ABC0210
MarR family transcriptional regulator.
  
   
 0.519
ABC2929
BC component PTS system mannitol-permease II.
   
    0.509
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.