STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC3624IclR family transcriptional regulator. (253 aa)    
Predicted Functional Partners:
ABC3623
C4-dicarboxylate transport system substrate-binding protein.
       0.790
ABC3617
acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
  
 0.775
ABC3773
Conserved hypothetical protein.
  
    0.758
ABC3621
C4-dicarboxylate transport system permease large protein.
       0.741
ABC3622
C4-dicarboxylate transport system permease small protein.
       0.741
ABC3618
long-chain-fatty-acid--CoA ligase.
  
   0.704
ABC3620
3-oxoacyl-[acyl-carrier-protein] reductase.
       0.704
ABC3772
Conserved hypothetical protein.
  
  
 0.698
ABC3616
Conserved hypothetical protein.
       0.689
ABC3619
Hypothetical protein.
       0.689
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.