Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC3661Oligopeptide ABC transporter substrate-binding protein. (526 aa)    
Predicted Functional Partners:
ABC3660
Oligopeptide ABC transporter permease.
 
 
 0.930
ABC3659
Oligopeptide ABC transporter permease.
 
 
 0.927
ABC1241
Oligopeptide ABC transporter permease.
 
 
 0.831
ABC1609
Oligopeptide ABC transporter permease.
 
 
 0.831
ABC1242
Oligopeptide ABC transporter permease.
 
 
 0.830
ABC1608
Oligopeptide ABC transporter permease.
 
 
 0.830
ABC0565
Oligopeptide ABC transporter permease.
 
 
 0.823
ABC0031
Oligopeptide ABC transporter permease.
 
 
 0.822
ABC0032
Oligopeptide ABC transporter permease.
 
 
 0.819
ABC0566
Oligopeptide ABC transporter permease.
 
 
 0.812
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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