Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC3674Conserved hypothetical protein. (502 aa)    
Predicted Functional Partners:
ABC3673
Conserved hypothetical protein.
 
  
 0.981
ABC2040
Conserved hypothetical protein.
 
  
 0.950
sppA
Signal peptidase SppA.
 
    0.553
ABC3364
Pyrophosphatase.
  
     0.511
ABC2399
Conserved hypothetical protein.
  
     0.492
ABC2746
Conserved hypothetical protein.
 
    0.462
ABC1906
Conserved hypothetical protein.
  
     0.417
ABC0230
Conserved hypothetical protein.
  
     0.407
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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