STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gerBCSpore germination protein. (374 aa)    
Predicted Functional Partners:
gerAB
Spore germination protein.
 
  
 0.976
ABC3703
Spore germination protein.
 
  
 0.941
gerKC
Spore germination protein KC.
  
   
 0.886
gerKA
Spore germination protein KA.
 
  
 0.874
gerAA
Sopre germination protein.
 
  
 0.832
ABC2022
Spore germination protein.
 
  
 0.800
gerKB
Spore germination protein KB.
 
  
 0.793
ABC3492
Spore germination protein KB.
 
  
 0.776
ABC2021
Spore germination protein.
 
  
 0.750
ABC2003
Sopre germination protein.
 
  
 0.671
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.