STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gerBCSpore germination protein. (374 aa)    
Predicted Functional Partners:
gerAB
Spore germination protein.
 
  
 0.975
ABC3703
Spore germination protein.
 
  
 0.938
gerKA
Spore germination protein KA.
 
  
 0.860
gerAA
Sopre germination protein.
 
  
 0.814
ABC2022
Spore germination protein.
 
  
 0.795
gerKB
Spore germination protein KB.
 
  
 0.786
ABC3492
Spore germination protein KB.
 
  
 0.769
gerKC
Spore germination protein KC.
  
     0.763
ABC2021
Spore germination protein.
 
  
 0.734
ABC2003
Sopre germination protein.
 
  
 0.650
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.