Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC3729Conserved hypothetical protein. (124 aa)    
Predicted Functional Partners:
ABC3728
Conserved hypothetical protein.
 
     0.744
ABC2511
Spore coat protein.
  
     0.644
ABC1880
Conserved hypothetical protein.
  
     0.619
ABC0281
Conserved hypothetical protein.
  
     0.609
ABC1772
Transcriptional regulator; Belongs to the GbsR family.
  
     0.599
ABC0015
Regulator of polyketide synthase expression.
  
     0.573
ABC2046
Thioredoxin.
  
     0.553
ABC1786
Conserved hypothetical protein.
  
     0.533
ABC0526
Conserved hypothetical protein.
 
     0.528
ABC0527
Conserved hypothetical protein.
 
     0.519
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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