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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC3773Conserved hypothetical protein. (241 aa)    
Predicted Functional Partners:
ABC3772
Conserved hypothetical protein.
 
 0.999
pxpA
Lactam utilization protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
  
 0.997
ABC3771
NRAMP family Mn2+/Fe2+ transporter.
 
  
 0.949
ABC1111
IclR family transcriptional regulator.
  
    0.670
ABC2172
IclR family transcriptional regulator.
  
    0.670
ABC3624
IclR family transcriptional regulator.
  
    0.670
ABC0571
IclR family transcriptional regulator.
  
    0.612
ABC0521
IclR family transcriptional regulator.
  
    0.568
mntH
Manganese transporter.
 
  
 0.510
ABC3774
Sugar ABC transporter substrate-binding protein.
       0.438
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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