STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC3815Tyrosine-protein kinase. (231 aa)    
Predicted Functional Partners:
ABC3816
Capsular polysaccharide biosynthesis protein.
 
 0.998
ABC3814
Capsular polysaccharide biosynthesis protein.
  
 0.984
ABC3697
Sugar transferase.
 
  
 0.882
ABC3104
Sugar transferase.
 
  
 0.847
lytR
Attenuator role for lytABC and lytR expression.
  
  
 0.507
ABC2439
Nucleoside-diphosphate-sugar epimerase.
   
 
  0.469
ABC3105
Glycosyltransferase.
 
   
 0.448
guaA
GMP synthetase; Catalyzes the synthesis of GMP from XMP.
   
 
 0.447
ABC3687
O-antigen transporter.
 
  
 0.436
metS
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.428
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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