STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC3818Conserved hypothetical protein. (162 aa)    
Predicted Functional Partners:
lytR
Attenuator role for lytABC and lytR expression.
       0.671
ABC0279
GNAT family acetyltransferase; Probable gene remnant. Similar to the C-terminal region of Bacillus subtilis YdfD protein SW:P96681 (482 aa); locus_tag:ABC0277.
  
     0.596
ABC1095
Conserved hypothetical protein.
  
     0.541
ABC3424
Cell surface protein.
  
     0.538
ABC3482
Conserved hypothetical protein.
  
  
 0.518
ABC3542
Conserved hypothetical protein.
  
     0.507
ABC3560
Transcriptional regulator.
 
 
 0.497
ABC1019
Conserved hypothetical protein.
  
     0.471
ABC1976
Conserved hypothetical protein.
  
     0.470
ABC2170
Conserved hypothetical protein.
  
     0.469
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.