Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gerAASopre germination protein. (504 aa)    
Predicted Functional Partners:
ABC3836
Spore germination protein.
 
  
 0.928
ABC3835
Spore germination protein.
 
  
 0.921
gerKC
Spore germination protein KC.
 
  
 0.895
gerBC
Spore germination protein.
 
  
 0.832
spoIIID
Stage III sporulation protein D.
 
     0.827
gerAC
Spore germination protein.
 
  
 0.817
ABC1797
Stage V sporulation protein AD.
  
  
 0.790
spoVAD
Stage V sporulation protein AD.
  
  
 0.790
ABC1827
Stage V sporulation protein AE.
  
  
 0.788
gerAB
Spore germination protein.
 
  
 0.788
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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