Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC3838Conserved hypothetical protein. (120 aa)    
Predicted Functional Partners:
flhP
Flagellar basal-body rod protein.
       0.798
flhO
Flagellar basal-body rod protein.
       0.786
mbl
Cell shape determining protein.
     
 0.783
ABC2421
Lipoprotein.
 
     0.764
ABC3906
Conserved hypothetical protein.
  
     0.741
ABC2797
DeoR family transcriptional regulator.
 
     0.737
ABC2399
Conserved hypothetical protein.
  
     0.736
ABC1879
Conserved hypothetical protein.
  
     0.722
ABC2033
Conserved hypothetical protein.
  
     0.701
ABC2638
Conserved hypothetical protein.
  
     0.697
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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