Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
spoIIQStage II sporulation protein Q. (286 aa)    
Predicted Functional Partners:
spoIIIAH
Stage III sporulation protein AH.
  
 
 0.997
spoIID
Stage II sporulation protein D.
 
   
 0.965
spoIIP
Stage II sporulation protein P; Septal wall dissolution protein.
  
  
 0.899
spoIIIAA
Stage III sporulation protein AA.
   
  
 0.862
spoIIM
Stage II sporulation protein M; Required for complete septum migration and engulfment of the forespore compartment during sporulation. Required for stabilizing and recruiting of SpoIIP to the septal membrane.
  
   
 0.841
cotE
Spore coat protein E.
  
  
 0.823
spoIIIAG
Stage III sporulation protein AG.
  
  
 0.823
spoIIID
Stage III sporulation protein D.
  
  
 0.820
spoIIE
Serine phosphatase stage II sporulation protein E.
  
   
 0.818
spoIVFA
Stage IV sporulation protein FA.
  
   
 0.817
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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