STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoIIQStage II sporulation protein Q. (286 aa)    
Predicted Functional Partners:
spoIIIAH
Stage III sporulation protein AH.
  
 
 0.987
spoIID
Stage II sporulation protein D.
 
   
 0.888
cotE
Spore coat protein E.
  
  
 0.810
pbpG
Penicillin-binding protein.
  
  
 0.808
spoIIP
Stage II sporulation protein P; Septal wall dissolution protein.
  
  
 0.784
ABC3063
Metalloendopeptidase.
  
     0.739
spoIIID
Stage III sporulation protein D.
  
  
 0.735
spoIIIAG
Stage III sporulation protein AG.
  
  
 0.710
cwlC
N-acetylmuramoyl-L-alanine amidase.
  
   
 0.694
spoIIIAA
Stage III sporulation protein AA.
   
  
 0.689
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.