Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC3848Hypothetical protein. (252 aa)    
Predicted Functional Partners:
ABC3849
Conserved hypothetical protein.
 
  
 0.848
ABC1312
Conserved hypothetical protein.
  
     0.770
ABC1291
Conserved hypothetical protein.
  
     0.763
ABC2943
Conserved hypothetical protein.
  
     0.762
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
       0.756
ABC1911
Conserved hypothetical protein.
  
     0.748
spo0B
Stage 0 sporulation protein B.
  
     0.747
ABC1696
Conserved hypothetical protein.
  
     0.747
ABC2163
Conserved hypothetical protein.
  
     0.740
ABC1781
Conserved hypothetical protein.
  
     0.726
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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