Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
vprMinor extracellular serine protease; Belongs to the peptidase S8 family. (759 aa)    
Predicted Functional Partners:
ABC3858
ATP synthase protein I.
 
     0.555
ABC3859
Conserved hypothetical protein.
 
     0.550
sapB
Magnesium transporter.
      
 0.548
ABC0333
Conserved hypothetical protein.
 
 
 0.510
rocD
Ornithine aminotransferase; Catalyzes the interconversion of ornithine to glutamate semialdehyde.
      
 0.502
ABC3861
Conserved hypothetical protein.
       0.501
mntA
Mn2+/Zn2+ ABC transporter substrate-binding protein; Belongs to the bacterial solute-binding protein 9 family.
   
  
 0.500
spo0J
Stage 0 sporulation protein J; Antagonist of Soj; Belongs to the ParB family.
  
  
 0.500
gcp
Glycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
    
 
 0.491
gidB
Glucose inhibited division protein B; Specifically methylates the N7 position of guanine in position 535 of 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
      
 0.490
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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