STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC3892Fe-S oxidoreductase. (693 aa)    
Predicted Functional Partners:
ABC2990
3-hydroxyacyl-CoA dehydrogenase.
 
  
 0.794
ABC2988
acyl-CoA dehydrogenase.
 
  
 0.793
etfB
Electron transfer flavoprotein beta subunit.
 
  
 0.770
mmgB
3-hydroxybutyryl-CoA dehydrogenase.
 
  
 0.761
mmgC
acyl-CoA dehydrogenase.
 
  
 0.713
lutB
Iron-sulfur protein; Is involved in L-lactate degradation and allows cells to grow with lactate as the sole carbon source. Has probably a role as an electron transporter during oxidation of L-lactate.
 
 
 0.697
ABC3888
TetR/AcrR family transcriptional regulator.
 
  
 0.692
etfA
Electron transfer flavoprotein alpha subunit.
 
  
 0.679
lutC
Conserved hypothetical protein; Is involved in L-lactate degradation and allows cells to grow with lactate as the sole carbon source.
  
 
 0.637
ABC2672
TetR/AcrR family transcriptional regulator.
 
  
 0.622
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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