STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC3896Conserved hypothetical protein. (143 aa)    
Predicted Functional Partners:
argS
arginyl-tRNA synthetase.
  
    0.917
ABC2935
Conserved hypothetical protein.
  
     0.705
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
  
    0.692
ABC2288
arginyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.690
speB
Agmatinase; Belongs to the arginase family.
       0.680
ABC0908
HAD superfamily hydrolase.
 
     0.651
ABC2561
Conserved hypothetical protein.
  
     0.645
ABC3894
Conserved hypothetical protein.
       0.640
ABC1866
Conserved hypothetical protein.
  
     0.626
ABC1564
Conserved hypothetical protein.
  
     0.594
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.