STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC3916Na+ efflux ABC transporter ATP-binding protein. (300 aa)    
Predicted Functional Partners:
ABC3915
Na+ efflux ABC transporter permease.
 
  
 0.991
ABC3917
Na+ efflux ABC transporter ATP-binding protein.
 
    
0.845
ABC3918
GntR family transcriptional regulator.
  
    0.838
ABC3186
Multidrug ABC transporter permease.
 
      0.796
ABC3919
Hypothetical protein.
       0.789
ABC3914
Hypothetical protein.
       0.586
yidC
Stage III sporulation protein J; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins; Belongs to the OXA1/ALB3/YidC family. Type 2 subfamily.
       0.523
ABC0048
Conserved hypothetical protein.
  
    0.506
ABC0707
Antimicrobial peptide ABC transporter ATP-binding protein.
 
    
0.496
ABC3907
Conserved hypothetical protein.
  
    0.495
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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