STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nrgAAmmonium transporter. (421 aa)    
Predicted Functional Partners:
gltA
Glutamate synthase large subunit.
 
  
 0.941
ABC3927
Conserved hypothetical protein.
 
   
 0.902
ABC3926
Conserved hypothetical protein.
 
     0.858
tnrA
Transcriptional regulator.
  
  
 0.789
citB
Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
  
  
 0.777
glnA
Glutamine synthetase.
  
  
 0.739
ABC1700
Stage II sporulation protein J; Sporulation kinase A.
  
 
 0.697
citA
Citrate synthase I; Belongs to the citrate synthase family.
   
  
 0.660
mmgD
Citrate synthase; Belongs to the citrate synthase family.
   
  
 0.659
gltB
Glutamate synthase small subunit.
 
  
 0.659
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.