Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC3948Conserved hypothetical protein. (172 aa)    
Predicted Functional Partners:
ABC3949
Flotillin-like protein.
 
  
 0.998
ABC1671
Conserved hypothetical protein.
  
  
 0.758
ABC0690
Conserved hypothetical protein.
  
     0.656
ABC0691
DNA segregation ATPase.
  
     0.653
ABC0688
Conserved hypothetical protein; Belongs to the WXG100 family.
  
     0.623
ABC2674
Conserved hypothetical protein.
  
     0.562
rsiW
Anti-sigma factor; Is the anti-sigma factor for SigW. The presence of RsiW leads to the inactivation of SigW, and its proteolytic destruction to sigma-W activation (By similarity); Belongs to the zinc-associated anti-sigma factor (ZAS) superfamily. Anti-sigma-W factor family.
  
    0.557
ABC1712
Conserved hypothetical protein.
  
  
 0.521
ABC3534
Hypothetical protein.
  
    0.521
ABC3028
Conserved hypothetical protein.
   
  
 0.512
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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