Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
bmrUMultidrug resistance protein. (303 aa)    
Predicted Functional Partners:
katX
Catalase; Belongs to the catalase family.
  
  
 0.682
ctc
Ribosomal protein L25 family general stress protein; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
   
  
 0.661
ohrB
Organic hydroperoxide resistance protein.
   
  
 0.660
gsiB
General stress protein B.
   
  
 0.573
gtaB
UTP-glucose-1-phosphate uridylyltransferase.
      
 0.557
opuD
Glycine betaine transporter; Belongs to the BCCT transporter (TC 2.A.15) family.
     
 0.553
ABC3973
Conserved hypothetical protein.
  
    0.549
phoR
Two-component sensor histidine kinase.
     
 0.482
phoP
Two-component response regulator of alkaline phosphatase synthesis.
      
 0.452
sigH
DNA-directed RNA polymerase sigma-30 factor sigma-H; Belongs to the sigma-70 factor family.
      
 0.451
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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