STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC3976Zn-dependent protease. (308 aa)    
Predicted Functional Partners:
ABC3975
MerR family transcriptional activator.
 
     0.843
ABC4068
Conserved hypothetical protein.
  
     0.613
ABC3527
Conserved hypothetical protein.
  
     0.606
ABC0392
Hypothetical protein.
  
     0.533
ABC3619
Hypothetical protein.
  
     0.474
ABC3639
Bacitracin ABC transporter permease.
  
     0.462
ABC3534
Hypothetical protein.
  
     0.442
ABC3977
Conserved hypothetical protein.
       0.413
ABC2537
Zn-dependent protease.
  
     0.406
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.