STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC3983Hypothetical protein. (547 aa)    
Predicted Functional Partners:
ABC3982
Hypothetical protein.
  
  
 0.813
ABC3984
Hypothetical protein.
       0.746
ABC0690
Conserved hypothetical protein.
 
    0.584
ABC3718
Conserved hypothetical protein.
  
     0.581
ABC1356
Conserved hypothetical protein.
  
     0.572
ABC3981
Hypothetical protein.
  
  
 0.557
ABC3980
Hypothetical protein.
  
  
 0.432
ABC1781
Conserved hypothetical protein.
  
     0.417
gspA
Lipopolysaccharide glycosyltransferase.
  
     0.405
ABC1728
Conserved hypothetical protein.
  
     0.403
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.