STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC4020G3E family GTPase. (395 aa)    
Predicted Functional Partners:
rpsN-2
30S ribosomal protein S14 family; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
 
 0.912
ABC1118
Conserved hypothetical protein.
 
  
 0.790
ABC1117
Mn2+/Zn2+ ABC transporter substrate-binding protein; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.691
ABC1439
Metal ion ABC transporter substrate-binding protein; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.691
rpsN
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
 
 0.629
rpmGA
50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
  
  
 0.612
map-3
Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
  
 
 
 0.607
mntA
Mn2+/Zn2+ ABC transporter substrate-binding protein; Belongs to the bacterial solute-binding protein 9 family.
 
  
 0.572
rpmB
50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.571
ABC1986
General stress protein GSP160.
  
  
 0.531
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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