Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC4022Glyoxylase. (325 aa)    
Predicted Functional Partners:
ABC2025
Esterase.
    0.952
ABC1713
Oxidoreductase.
 
    0.862
ABC2026
Conserved hypothetical protein.
  
  
 0.833
ABC0839
Conserved hypothetical protein.
 
  
 0.681
ABC3829
Nuclease inhibitor.
     
 0.626
ABC3972
Conserved hypothetical protein.
 
    0.593
ABC4023
3-polyprenyl-4-hydroxybenzoate decarboxylase; Belongs to the UbiD family.
       0.485
deoD
Purine-nucleoside phosphorylase.
       0.477
birA
Bifunctional biotin biosynthesis protein BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
    0.468
sdhC
Succinate dehydrogenase cytochrome b558 subunit.
   
    0.439
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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