Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC4047GntR family transcriptional regulator. (226 aa)    
Predicted Functional Partners:
ABC0546
Transcriptional regulator.
  
     0.769
ABC4039
GntR family transcriptional regulator.
 
  
 0.677
ABC4038
GntR family transcriptional regulator.
 
  
 0.635
ABC2722
Transcriptional regulator.
 
  
 0.620
ABC0472
GntR family transcriptional regulator.
 
  
 0.571
uxuA
Mannonate dehydratase 1; Catalyzes the dehydration of D-mannonate; Belongs to the mannonate dehydratase family.
 
   
 0.571
ABC4048
Ureidoglycolate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family.
       0.559
ABC0475
GntR family transcriptional regulator.
 
  
 0.540
ABC4044
TRAP-type transport system permease large protein.
  
    0.514
ABC4045
TRAP-type transport system permease small protein.
       0.510
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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