Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABC4048Ureidoglycolate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family. (345 aa)    
Predicted Functional Partners:
uxuA
Mannonate dehydratase 1; Catalyzes the dehydration of D-mannonate; Belongs to the mannonate dehydratase family.
  
    0.729
ABC0632
Mannonate oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
    0.683
ABC4047
GntR family transcriptional regulator.
       0.559
ABC0466
Conserved hypothetical protein; Catalyzes the dehydration of D-mannonate.
  
    0.490
ABC4045
TRAP-type transport system permease small protein.
  
    0.461
ABC0438
Zn-dependent alcohol dehydrogenase.
  
    0.447
ABC0630
Zn-dependent alcohol dehydrogenase.
  
    0.447
ABC4046
TRAP-type transport system substrate-binding protein.
  
    0.415
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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