Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC4059TetR/AcrR family transcriptional regulator. (193 aa)    
Predicted Functional Partners:
ABC4061
Conserved hypothetical protein.
 
  
 0.928
ABC4060
RND superfamily drug exporter.
 
     0.898
pth
peptidyl-tRNA hydrolase stage V sporulation protein C; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.614
lytT
Two-component response regulator.
       0.468
lytS
Two-component sensor histidine kinase.
       0.468
ABC2566
Intracellular proteinase inhibitor.
  
     0.455
ABC3175
Conserved hypothetical protein.
  
     0.404
ABC0987
Lipase.
  
     0.402
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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