Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ABC4063Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily. (326 aa)    
Predicted Functional Partners:
ABC4064
Oligopeptide ABC transporter permease.
 
 0.979
ABC4065
Oligopeptide ABC transporter permease.
 
 
 0.945
dppC
Dipeptide ABC transporter permease.
 
 0.931
ABC0566
Oligopeptide ABC transporter permease.
 
 0.893
ABC1608
Oligopeptide ABC transporter permease.
 
 0.884
ABC1242
Oligopeptide ABC transporter permease.
 
 0.877
ABC3659
Oligopeptide ABC transporter permease.
 
 0.873
ABC2412
Oligopeptide ABC transporter permease.
 
 0.842
ABC0032
Oligopeptide ABC transporter permease.
 
 0.833
ABC4062
Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
   
0.830
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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