STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC4080Sorbitol dehydrogenase. (344 aa)    
Predicted Functional Partners:
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
     
 0.904
ABC3225
Fructokinase.
  
 
  0.903
ABC3116
Levanase; Belongs to the glycosyl hydrolase 32 family.
     
  0.900
ABC4079
C4-dicarboxylate transport system substrate-binding protein.
       0.789
ABC4077
C4-dicarboxylate transport system permease large protein.
       0.774
ABC4078
C4-dicarboxylate transport system permease small protein.
       0.774
ABC4076
L-fuculose phosphate aldolase.
       0.742
ABC4081
GntR family transcriptional regulator.
       0.701
ABC4082
Conserved hypothetical protein.
  
    0.682
ABC0859
BC component PTS system fructose-specific enzyme II.
   
 
 0.662
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.