Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC4082Conserved hypothetical protein. (445 aa)    
Predicted Functional Partners:
ABC4076
L-fuculose phosphate aldolase.
 
  
 0.822
ABC4081
GntR family transcriptional regulator.
       0.734
ABC4079
C4-dicarboxylate transport system substrate-binding protein.
 
     0.682
ABC4080
Sorbitol dehydrogenase.
  
    0.682
ABC4078
C4-dicarboxylate transport system permease small protein.
 
     0.678
ABC4077
C4-dicarboxylate transport system permease large protein.
       0.634
ABC0659
Conserved hypothetical protein.
  
     0.566
deoR
Transcriptional regulator of sorbose uptake and utilization genes.
  
     0.513
ABC3757
Conserved hypothetical protein.
 
  
 0.467
ABC4083
Hypothetical protein.
       0.440
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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