STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC4109Conserved hypothetical protein. (342 aa)    
Predicted Functional Partners:
ABC4110
Conserved hypothetical protein.
 
  
 0.771
ABC2421
Lipoprotein.
  
     0.625
ychF
GTP-binding protein; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
       0.617
ABC1712
Conserved hypothetical protein.
  
     0.610
ABC1070
Transcriptional regulator; Belongs to the GbsR family.
  
     0.590
ABC1880
Conserved hypothetical protein.
  
     0.578
spoIIIAE
Stage III sporulation protein AE.
  
    0.570
ABC2529
Conserved hypothetical protein.
  
     0.563
spoIIIAF
Stage III sporulation protein AF.
  
    0.560
spoIIIAG
Stage III sporulation protein AG.
  
    0.549
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.