Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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[Homology]
Score
AEH44027.1Orn/DAP/Arg decarboxylase 2; COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR000183; KEGG: pmx:PERMA_0884 diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; SPTR: Diaminopimelate decarboxylase; IMG reference gene:2505283425; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain. (450 aa)    
Predicted Functional Partners:
AEH44026.1
Peptidase M23; COGs: COG4413 Urea transporter; InterPro IPR016047; KEGG: pmx:PERMA_0885 putative UreA transporter; PFAM: Peptidase M23; SPTR: Putative urea transporter; IMG reference gene:2505283424; PFAM: Urea transporter; Peptidase family M23.
 
   
 0.961
AEH44028.1
COGs: COG3919 ATP-grasp protein; InterPro IPR011761; KEGG: pmx:PERMA_0883 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283426.
 
     0.939
AEH44029.1
KEGG: pmx:PERMA_0882 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283427; PFAM: Coenzyme PQQ synthesis protein D (PqqD).
 
     0.936
AEH44024.1
Tetratricopeptide TPR_1 repeat-containing protein; InterPro IPR001440:IPR019734:IPR013026; KEGG: pmx:PERMA_0887 tetratricopeptide repeat domain protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: Tetratricopeptide repeat domain protein; IMG reference gene:2505283422; PFAM: Tetratricopeptide repeat.
 
     0.935
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
 
 
 0.930
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
  
  
 
0.921
murE
UDP-N-acetylmuramyl-tripeptide synthetase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.
     
 0.911
AEH44268.1
COGs: COG1794 Aspartate racemase; InterPro IPR004380:IPR015942:IPR018187; KEGG: sdn:Sden_1375 aspartate racemase; PFAM: Asp/Glu/hydantoin racemase; SPTR: Aspartate racemase; TIGRFAM: aspartate racemase; IMG reference gene:2505283675; PFAM: Asp/Glu/Hydantoin racemase; TIGRFAM: aspartate racemase; Belongs to the aspartate/glutamate racemases family.
    
  0.900
AEH45908.1
Lysine 2,3-aminomutase YodO family protein; COGs: COG1509 Lysine 2 3-aminomutase; InterPro IPR003739:IPR007197; KEGG: kol:Kole_1669 lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein; PRIAM: Lysine 2,3-aminomutase; SPTR: Lysine 2,3-aminomutase YodO family protein; TIGRFAM: lysine 2,3-aminomutase YodO family protein; IMG reference gene:2505285395; PFAM: Radical SAM superfamily; TIGRFAM: KamA family protein.
     
 0.803
AEH44025.1
KEGG: pmx:PERMA_0886 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283423.
       0.778
Your Current Organism:
Thermodesulfatator indicus
NCBI taxonomy Id: 667014
Other names: T. indicus DSM 15286, Thermodesulfatator indicus CIR29812, Thermodesulfatator indicus DSM 15286, Thermodesulfatator indicus str. DSM 15286, Thermodesulfatator indicus strain DSM 15286, Thermodesulfobacterium sp. CIR29812
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