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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEH44432.1Protein of unknown function DUF498; COGs: COG1504 conserved hypothetical protein; InterPro IPR007523; KEGG: adg:Adeg_1298 protein of unknown function DUF498; PFAM: protein of unknown function DUF498; SPTR: Putative uncharacterized protein; IMG reference gene:2505283845; PFAM: Protein of unknown function (DUF498/DUF598). (116 aa)    
Predicted Functional Partners:
prfA
Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
 
     0.847
rpmE
Ribosomal protein L31; Binds the 23S rRNA.
       0.820
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
       0.581
AEH44045.1
Tetratricopeptide TPR_1 repeat-containing protein; InterPro IPR001440:IPR013026:IPR019734; KEGG: nve:NEMVE_v1g201578 hypothetical protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SPTR: Predicted protein; IMG reference gene:2505283443.
  
     0.456
AEH45960.1
Peptidase zinc-dependent; COGs: COG1913 Zn-dependent protease; InterPro IPR012091:IPR012962; KEGG: dth:DICTH_1693 hypothetical protein; PFAM: peptidase zinc-dependent; SPTR: Putative uncharacterized protein; IMG reference gene:2505285449; PFAM: Peptidase family M54.
 
     0.414
Your Current Organism:
Thermodesulfatator indicus
NCBI taxonomy Id: 667014
Other names: T. indicus DSM 15286, Thermodesulfatator indicus CIR29812, Thermodesulfatator indicus DSM 15286, Thermodesulfatator indicus str. DSM 15286, Thermodesulfatator indicus strain DSM 15286, Thermodesulfobacterium sp. CIR29812
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