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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEH44957.1KEGG: gsu:GSU0640 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284396; PFAM: Protein of unknown function (DUF3343). (81 aa)    
Predicted Functional Partners:
AEH44956.1
Cysteine desulfurase family protein; COGs: COG0520 Selenocysteine lyase; InterPro IPR020578:IPR000192:IPR010969; KEGG: sat:SYN_01071 cysteine desulfurase / selenocysteine lyase; PFAM: aminotransferase class V; SPTR: Cysteine desulfurase / selenocysteine lyase; TIGRFAM: cysteine desulfurase family protein; IMG reference gene:2505284395; PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurase family protein.
 
   
 0.877
AEH44955.1
Selenium metabolism protein YedF; InterPro IPR001455:IPR019870; KEGG: drm:Dred_1242 SirA family protein; PFAM: SirA-like domain-containing protein; SPTR: Transcriptional regulator; TIGRFAM: selenium metabolism protein YedF; IMG reference gene:2505284394; PFAM: DsrE/DsrF-like family; SirA-like protein; TIGRFAM: selenium metabolism protein YedF; Belongs to the sulfur carrier protein TusA family.
 
     0.821
smpB
SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]
       0.655
AEH44321.1
PASTA domain containing protein; InterPro IPR005543; KEGG: tle:Tlet_1434 peptidoglycan glycosyltransferase; PFAM: PASTA domain containing protein; SMART: PASTA domain containing protein; SPTR: Peptidoglycan glycosyltransferase; IMG reference gene:2505283728; PFAM: Penicillin binding protein transpeptidase domain; PASTA domain.
  
     0.566
AEH44906.1
KEGG: dvl:Dvul_2509 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284345.
  
     0.549
AEH45786.1
KEGG: sat:SYN_01861 sex pilus assembly/synthesis protein; SPTR: Hypothetical sex pilus assembly and synthesis protein; IMG reference gene:2505285267; PFAM: TraE protein; TIGRFAM: type IV conjugative transfer system protein TraE.
  
     0.516
AEH45792.1
KEGG: sat:SYN_01873 hypothetical protein; SPTR: Hypothetical exported protein; IMG reference gene:2505285273.
  
     0.465
AEH45810.1
InterPro IPR019106; KEGG: ppd:Ppro_0250 hypothetical protein; PFAM: Type-F conjugative transfer system pilin assembly protein TrbC; SPTR: Conserved hypothetical cytosolic protein; IMG reference gene:2505285292; PFAM: Type-F conjugative transfer system pilin assembly protein.
  
     0.461
AEH44952.1
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: ank:AnaeK_1445 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase group 1; IMG reference gene:2505284391; PFAM: Glycosyl transferases group 1.
       0.451
AEH44953.1
COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: bts:Btus_0502 polysaccharide deacetylase; PFAM: polysaccharide deacetylase; SPTR: Polysaccharide deacetylase; IMG reference gene:2505284392; PFAM: Polysaccharide deacetylase.
       0.451
Your Current Organism:
Thermodesulfatator indicus
NCBI taxonomy Id: 667014
Other names: T. indicus DSM 15286, Thermodesulfatator indicus CIR29812, Thermodesulfatator indicus DSM 15286, Thermodesulfatator indicus str. DSM 15286, Thermodesulfatator indicus strain DSM 15286, Thermodesulfobacterium sp. CIR29812
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