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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEH45113.1SufBD protein; COGs: COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component; InterPro IPR000825; KEGG: dba:Dbac_1810 SufBD protein; PFAM: SufBD protein; SPTR: SufBD protein; IMG reference gene:2505284558; PFAM: Uncharacterized protein family (UPF0051). (393 aa)    
Predicted Functional Partners:
AEH45114.1
ABC transporter related protein; COGs: COG0396 ABC-type transport system involved in Fe-S cluster assembly ATPase component; InterPro IPR003593:IPR003439; KEGG: deg:DehalGT_0696 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Iron-regulated ABC transporter, atp-binding protein, SufC; IMG reference gene:2505284559; PFAM: ABC transporter; TIGRFAM: FeS assembly ATPase SufC.
 
 0.999
AEH44956.1
Cysteine desulfurase family protein; COGs: COG0520 Selenocysteine lyase; InterPro IPR020578:IPR000192:IPR010969; KEGG: sat:SYN_01071 cysteine desulfurase / selenocysteine lyase; PFAM: aminotransferase class V; SPTR: Cysteine desulfurase / selenocysteine lyase; TIGRFAM: cysteine desulfurase family protein; IMG reference gene:2505284395; PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurase family protein.
 
 
 0.972
AEH45115.1
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
       0.541
tatC-2
Sec-independent periplasmic protein translocase; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes.
     
 0.541
AEH45137.1
Ferric uptake regulator, Fur family; COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481:IPR007167; KEGG: dal:Dalk_1640 ferric uptake regulator, Fur family; PFAM: FeoA family protein; ferric-uptake regulator; SPTR: Ferric uptake regulator, Fur family; IMG reference gene:2505284583; PFAM: FeoA domain; Ferric uptake regulator family; Belongs to the Fur family.
     
 0.533
AEH45116.1
Twin-arginine translocation protein, TatB subunit; COGs: COG1826 Sec-independent protein secretion pathway components; InterPro IPR018448:IPR003369:IPR003998; KEGG: sul:SYO3AOP1_1474 twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; SPTR: Twin-arginine translocation protein, TatB subunit; TIGRFAM: twin-arginine translocation protein, TatB subunit; IMG reference gene:2505284561; PFAM: mttA/Hcf106 family; TIGRFAM: twin arginine-targeting protein translocase, TatA/E family; twin arginine-targeting protein translocase TatB.
       0.527
AEH45118.1
Cytochrome c, class III, conserved region; InterPro IPR020942:IPR002322:IPR011031; KEGG: tye:THEYE_A1056 cytochrome c3 chain A; PFAM: Cytochrome c, class III, conserved region; SPTR: Chain A, Cytochrome C3 From Desulfomicrobium Baculatus; IMG reference gene:2505284563; PFAM: Class III cytochrome C family.
 
   
 0.443
acsA
acetate/CoA ligase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.
       0.441
AEH44959.1
FAD-dependent pyridine nucleotide-disulfide oxidoreductase; COGs: COG0446 NAD(FAD)-dependent dehydrogenase; InterPro IPR002355:IPR001763:IPR013027:IPR004099; KEGG: dps:DP2890 NADH oxidase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SMART: Rhodanese domain protein; SPTR: Related to NADH oxidase; IMG reference gene:2505284398; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Rhodanese-like domain; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain.
     
 0.409
cysS
Cysteine synthase; COGs: COG0215 Cysteinyl-tRNA synthetase; InterProIPR001926:IPR015803:IPR001216:IPR005856:IPR 002308; KEGG: sat:SYN_00075 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia; Pyridoxal-5'-phosphate-dependent protein beta subunit; SPTR: Cysteinyl-tRNA synthetase; TIGRFAM: cysteine synthase; cysteinyl-tRNA synthetase; IMG reference gene:2505283966; PFAM: tRNA synthetases class I (C) catalytic domain; DALR domain; Pyridoxal-phosphate dependent enzyme; TIGRFAM: cysteine synthases; cysteinyl-tRNA synthetase; cysteine synthase B.
      
 0.403
Your Current Organism:
Thermodesulfatator indicus
NCBI taxonomy Id: 667014
Other names: T. indicus DSM 15286, Thermodesulfatator indicus CIR29812, Thermodesulfatator indicus DSM 15286, Thermodesulfatator indicus str. DSM 15286, Thermodesulfatator indicus strain DSM 15286, Thermodesulfobacterium sp. CIR29812
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