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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEH45230.1KEGG: kpe:KPK_4939 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284678. (80 aa)    
Predicted Functional Partners:
AEH45231.1
Integron integrase; COGs: COG4974 Site-specific recombinase XerD; InterPro IPR011946:IPR002104; KEGG: cpb:Cphamn1_1145 putative transcriptional regulator, TetR family; PFAM: integrase family protein; SPTR: Putative transcriptional regulator, TetR family; TIGRFAM: integron integrase; IMG reference gene:2505284679; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; TIGRFAM: integron integrase; Belongs to the 'phage' integrase family.
       0.493
AEH45229.1
InterPro IPR004919:IPR018651; KEGG: tai:Taci_1486 protein of unknown function DUF262; PFAM: protein of unknown function DUF262; Protein of unknown function DUF2081; SPTR: Putative uncharacterized protein; IMG reference gene:2505284677; PFAM: Uncharacterized conserved protein (DUF2081); Protein of unknown function DUF262.
       0.420
Your Current Organism:
Thermodesulfatator indicus
NCBI taxonomy Id: 667014
Other names: T. indicus DSM 15286, Thermodesulfatator indicus CIR29812, Thermodesulfatator indicus DSM 15286, Thermodesulfatator indicus str. DSM 15286, Thermodesulfatator indicus strain DSM 15286, Thermodesulfobacterium sp. CIR29812
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