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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEH45406.1KEGG: sfu:Sfum_0603 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284864. (219 aa)    
Predicted Functional Partners:
AEH45404.1
KEGG: dba:Dbac_2226 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284862.
       0.658
AEH45405.1
KEGG: dba:Dbac_2225 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284863; PFAM: Protein of unknown function (DUF1329).
       0.658
AEH45403.1
Patched family protein; COGs: COG1033 exporter of the RND superfamily protein; InterPro IPR000731; KEGG: dba:Dbac_2229 patched family protein; SPTR: Patched; IMG reference gene:2505284861; PFAM: MMPL family.
       0.609
pyrF
Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.
       0.566
AEH45408.1
Protein of unknown function DUF763; COGs: COG1415 conserved hypothetical protein; InterPro IPR008482; KEGG: mta:Moth_0136 hypothetical protein; PFAM: protein of unknown function DUF763; SPTR: Putative uncharacterized protein; IMG reference gene:2505284866; PFAM: Protein of unknown function (DUF763).
       0.566
secY
Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
    
   0.518
AEH45435.1
InterPro IPR000209; KEGG: bbr:BB0911 putative serine protease; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; SPTR: Subtilisin-like serine protease P4; IMG reference gene:2505284894; PFAM: Subtilase family.
    
   0.518
Your Current Organism:
Thermodesulfatator indicus
NCBI taxonomy Id: 667014
Other names: T. indicus DSM 15286, Thermodesulfatator indicus CIR29812, Thermodesulfatator indicus DSM 15286, Thermodesulfatator indicus str. DSM 15286, Thermodesulfatator indicus strain DSM 15286, Thermodesulfobacterium sp. CIR29812
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