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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEH46011.1COGs: COG4123 O-methyltransferase; InterPro IPR007848:IPR002052; KEGG: sat:SYN_01006 methyltransferase; PFAM: methyltransferase small; SPTR: Methyltransferase; IMG reference gene:2505285500; PFAM: Methyltransferase small domain; Belongs to the methyltransferase superfamily. (242 aa)    
Predicted Functional Partners:
AEH46010.1
Protein of unknown function DUF62; COGs: COG1912 conserved hypothetical protein; InterPro IPR002747; KEGG: pis:Pisl_0002 hypothetical protein; PFAM: protein of unknown function DUF62; SPTR: Putative uncharacterized protein; IMG reference gene:2505285499; PFAM: S-adenosyl-l-methionine hydroxide adenosyltransferase.
       0.791
rsmI
Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
 
  
 0.655
AEH45605.1
Excinuclease ABC C subunit domain protein; COGs: COG2827 endonuclease containing a URI domain; InterPro IPR000305; KEGG: dol:Dole_2997 excinuclease ABC subunit C; PFAM: Excinuclease ABC C subunit domain protein; SMART: Excinuclease ABC C subunit domain protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285072; PFAM: GIY-YIG catalytic domain.
  
  
 0.600
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
    0.441
Your Current Organism:
Thermodesulfatator indicus
NCBI taxonomy Id: 667014
Other names: T. indicus DSM 15286, Thermodesulfatator indicus CIR29812, Thermodesulfatator indicus DSM 15286, Thermodesulfatator indicus str. DSM 15286, Thermodesulfatator indicus strain DSM 15286, Thermodesulfobacterium sp. CIR29812
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