STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY36160.1anti-FecI sigma factor, FecR; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: bfs:BF1413 putative anti-sigma factor; PFAM: FecR protein; SPTR: Sigma factor regulatory protein, FecR/PupR family; PFAM: FecR protein. (303 aa)    
Predicted Functional Partners:
ADY35422.1
anti-FecI sigma factor, FecR; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: bfs:BF0684 putative anti-sigma factor; PFAM: FecR protein; SPTR: Putative uncharacterized protein; manually curated; PFAM: FecR protein.
  
  
 
0.923
ADY36866.1
anti-FecI sigma factor, FecR; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: bvu:BVU_1780 putative anti-sigma factor; PFAM: FecR protein; SPTR: Putative anti-sigma factor; PFAM: FecR protein.
  
  
 
0.916
ADY36161.1
RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR014327:IPR007627:IPR013249; KEGG: bvu:BVU_0387 putative RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: Putative uncharacterized protein; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Ba [...]
 
 
 0.838
ADY36865.1
RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284:IPR014327; KEGG: bvu:BVU_1779 putative ECF-type RNA polymerase sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: Putative uncharacterized protein; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Ba [...]
 
 
 0.790
ADY36159.1
COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: bvu:BVU_1806 hypothetical protein; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: Putative uncharacterized protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
 
  
 0.698
ADY37559.1
TonB-dependent receptor; InterPro IPR000531; KEGG: bvu:BVU_1334 putative TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; SPTR: Putative uncharacterized protein; PFAM: TonB dependent receptor.
 
 
 0.657
ADY36158.1
RagB/SusD domain-containing protein; InterPro IPR012944; KEGG: bvu:BVU_1807 hypothetical protein; PFAM: RagB/SusD; SPTR: Putative outer membrane protein, probably involved in nutrient binding; PFAM: SusD family.
 
     0.553
ADY37317.1
TonB-dependent receptor plug; InterPro IPR012910:IPR000531; KEGG: bvu:BVU_1369 hypothetical protein; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: Putative uncharacterized protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
 
  
 0.549
ADY37340.1
KEGG: bvu:BVU_0842 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: SusD family.
  
     0.513
ADY37316.1
RagB/SusD domain-containing protein; InterPro IPR012944; KEGG: bvu:BVU_1368 hypothetical protein; PFAM: RagB/SusD; SPTR: Putative uncharacterized protein; PFAM: SusD family.
  
     0.485
Your Current Organism:
Bacteroides salanitronis
NCBI taxonomy Id: 667015
Other names: B. salanitronis DSM 18170, Bacteroides salanitronis BL78, Bacteroides salanitronis DSM 18170, Bacteroides salanitronis JCM 13657, Bacteroides salanitronis str. DSM 18170, Bacteroides salanitronis strain DSM 18170
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