STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YdeU_2Outer membrane autotransporter barrel domain protein; COG: COG3468; Pfam: PF03797; InterPro: IPR006315. (501 aa)    
Predicted Functional Partners:
wzzE
Putative lipopolysaccharide biosynthesis protein WzzE.
  
     0.647
rhaT2
Putative membrane protein; COG: COG0697; Pfam: PF00892; InterPro: IPR000620.
  
     0.562
rhaT3
Putative membrane protein; COG: COG0697; Pfam: PF00892; InterPro: IPR000620.
  
     0.544
HtrE
Fimbrial usher protein; COG: COG3188; Pfam: PF00577; InterPro: IPR000015.
  
    0.536
FimC
Gram-negative pili assembly chaperone domain protein; COG: COG3121; Pfam: PF00345,PF02753; InterPro: IPR008962.
  
    0.533
tnaB
Aromatic amino acid transport protein; COG: COG0814; Pfam: PF03222; InterPro: IPR002091.
  
     0.521
tnaB2
Aromatic amino acid transport protein; COG: COG0814; Pfam: PF03222; InterPro: IPR002091.
  
     0.512
ttrC
Polysulfide reductase, NrfD; Pfam: PF03916.
  
     0.494
YcdY
Hypothetical protein; COG: COG3381.
  
     0.470
YgiW
Putative TIGR00156 family protein; COG: COG3111; Pfam: PF04076; InterPro: IPR005220.
  
     0.461
Your Current Organism:
Pasteurella dagmatis
NCBI taxonomy Id: 667128
Other names: P. dagmatis ATCC 43325, Pasteurella dagmatis ATCC 43325, Pasteurella dagmatis str. ATCC 43325, Pasteurella dagmatis strain ATCC 43325
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.